BIOMODELLING SPRING RIGA
COST action OpenMultiMed Training School 7
11TH - 13TH OF AUGUST, 2019
RIGA, LATVIA
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The training school is the 7-th training school organised by COST action CA15120 “Open Multiscale Systems Medicine"
(OpenMultiMed, see http://openmultimed.net/ )
The main objective is to gather a critical mass of researchers and stakeholders from different disciplines and coordinate these researchers as a team to define and investigate important S&T challenges in multiscale systems medicine, and to improve existing and develop novel solutions for multiscale systems medicine.
Join us for a 3 day hands-on course and lectures on topics like:
1. Kinetic and stoichiometric modelling with COPASi tool
2. Constraint-based modelling with The COBRA Toolbox 3.0
3. Omics data analysis and human tissue metabolic models
4. Drug repurposing
Confirmed speakers
Prof. Egils StalidzansComputational Systems Biology group, University of Latvia
Director of Institute of Microbiology and Biotechnology
Latvia
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Iñigo ApaolazaDepartment of Biomedical Engineering and Sciences, TECNUN School of Engineering,
University of Navarra,
Spain
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Prof. Adil MardinogluSystems Medicine group, King's College London,
UK and KTH-Royal
Institute of Technology, Sweden |
Prof. Dr. Harald SchmidtChair of COST action
OpenMultiMed Head of Department of Pharmacology & Personalised Medicine,
Maastricht University, The Netherlands
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Research interests:
Kinetic and stoichiometric modeling of metabolism, modeling of paharmacokinetics, user of COPASI and COBRA
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Reasearch interests:
Systems Biology, Constraint-Based Modeling, drug target identification, user and developer of COBRA
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Research interests:
Systems Medicine, Integration of multi-omics using biological networks, Biomarker and drug target discovery, user/developer of RAVEN and user of COBRA
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Research interests:
Systems medicine, network pharmacology, drug repurposing
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Metabolic Pathway Analysis 2019 (MPA 2019)
The training course is organised to slightly overlap with a conference Metabolic Pathway Analysis 2019 (MPA 2019).
Until Tuesday noon, the 13th of August, the participants will have access to the session “Systems medicine" of the conference, which is the part of the course.
The course participants are encoureged to participate in the conference by taking advantage of the fact that flights are covered by COST action and you are in Riga anyway. The venue of conference is at the same building. There are no special conference registration discounts for course participants.
The course participants are encoureged to participate in the conference by taking advantage of the fact that flights are covered by COST action and you are in Riga anyway. The venue of conference is at the same building. There are no special conference registration discounts for course participants.
The MPA 2019 conference accepts abstracts for oral and poster presentations till the 12th of April (extended application deadline). Course participants can submit the abstract also later but these abstracts will not be considered for oral presentation - it can be accepted as a poster.
TRAINING SCHOOL SCHEDULE
Download shedule here
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Sunday, 11th of August
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12:30-13:00
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Welcome coffee and tea
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13:00-14:30
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Building and validating dynamic toy model by COPASI (hands-on tutorial) (Prof. Egils Stalidzans)
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14:30-15:00
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Coffee break
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18:00 - 19:00
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Optimising a kinetic model by COPASI (Prof. Egils Stalidzans)
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Monday, 12th of August
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09:00 - 10:30
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Constraint-Based Modelling with The COBRA Toolbox v3.0 (Iñigo Apaolaza)
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10:30 - 11:00
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Coffee break
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11:00 - 12:30
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Applications of Constraint-Based Modelling in medicine (Iñigo Apaolaza)
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12:30 - 14:00
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Lunch
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14:00 - 15:30
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The use of human tissue metabolic models in the analysis of the omics data (Prof. Adil Mardinoglu)
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15:30 - 16:00
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Coffee break
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16:00 - 17:30
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The use of Systems Medicine in treatment of liver diseases (Prof. Adil Mardinoglu)
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18:00 - 18:45
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Drug repurposing (Prof. Dr. Harald Schmidt)
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Tuesday, 13th of August
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09:00 - 09:40
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The use of systems biology in treatment of liver diseases (Prof. Adil Mardinoglu)
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09:40 - 10:30
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Metabolic Pathway Analysis conference (MPA2019) talks
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10:30 - 11:00
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Coffee break
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11:00 - 11:40
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TBA (Prof. Kathrin Thedieck)
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11:40 - 12:30
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Metabolic Pathway Analysis conference (MPA2019) talks
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